Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs138835468 | chr17:7894768 | G/A | 0.000327 | 211 | 16.43 | 15.33 | 11.2 | KM Plot |
| KIRP | rs138837943 | chr15:24509576 | C/T | 4.13E-5 | 208 | 17.03 | 14.8 | 10.23 | KM Plot |
| KIRP | rs138887541 | chr6:28216427 | A/AGAAACCTGTC | 1.98E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs139302892 | chr17:80803331 | C/T | 0.000118 | 208 | 15.33 | 17.2 | 15.15 | KM Plot |
| KIRP | rs139610805 | chr14:59832618 | TAACA/T | 0.000264 | 213 | 14.87 | 23.23 | 0.47 | KM Plot |
| KIRP | rs139624725 | chr6:27317016 | AC/A | 3.56E-7 | 212 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs1396837 | chr2:132323011 | A/G | 3.55E-5 | 214 | 18.25 | 13.88 | 14.7 | KM Plot |
| KIRP | rs139810697 | chr15:24511260 | G/T | 6.5E-5 | 209 | 17.02 | 14.8 | 10.23 | KM Plot |
| KIRP | rs139833483 | chr21:30242525 | C/CA | 0.0004 | 211 | 17 | 15.77 | 1.03 | KM Plot |
| KIRP | rs140148370 | chr15:24508475 | G/GT | 6.5E-5 | 209 | 17.02 | 14.8 | 10.23 | KM Plot |
| KIRP | rs140157109 | chr11:34917721 | T/C | 4.21E-12 | 213 | 17.13 | 12.6 | 5.57 | KM Plot |
| KIRP | rs140365013 | chr6:27523869 | G/A | 1.97E-7 | 214 | 16.5 | 12 | 9.77 | KM Plot |
| KIRP | rs140400396 | chr14:59864362 | C/T | 0.000124 | 212 | 15.88 | 16.53 | 6.63 | KM Plot |
| KIRP | rs140407515 | chr10:63440807 | G/GCATTATAGAATTTT | 0 | 213 | 18 | 9.65 | 3.38 | KM Plot |
| KIRP | rs140419902 | chr15:24504325 | C/T | 9.74E-5 | 208 | 17 | 14.03 | 8.73 | KM Plot |